Microbial community profiling for forensic drowning diagnosis across locations and submersion times.

Autoren: Su, Qin¹ (AUTHOR), Zhang, Xiaofeng² (AUTHOR), Chen, Xiaohui¹ (AUTHOR), Yu, Zhonghao² (AUTHOR), Wu, Weibin^1,2 (AUTHOR), Xiang, Qingqing¹ (AUTHOR), Yang, Chengliang² (AUTHOR), Zhao, Jian¹ (AUTHOR), Chen, Ling² (AUTHOR), Xu, Quyi¹ (AUTHOR) 153471813@qq.com, Liu, Chao^2,3 (AUTHOR) liuchaogzf@163.com

Quelle: BMC Microbiology. 4/24/2025, Vol. 25 Issue 1, p1-12. 12p.

Schlagwörter: *RANDOM forest algorithms, *MICROBIAL communities, *LIFE sciences, *NUCLEOTIDE sequencing, *MACHINE learning

A Discretized Overlap Resolution Algorithm (DORA) for resolving spatial overlaps in individual-based models of microbes.

Autoren: Hashem, Ihab¹ (AUTHOR), Wang, Jian¹ (AUTHOR), Van Impe, Jan F.M.¹ (AUTHOR) jan.vanimpe@kuleuven.be

Quelle: PLoS Computational Biology. 4/21/2025, Vol. 21 Issue 4, p1-21. 21p.

Schlagwörter: *MICROBIAL ecology, *MICROBIAL communities, *MICROBIAL growth, *BIOCHEMICAL engineering, *GRID cells

Microbial communities in the Hudson Strait amidst rapid environmental change.

Autoren: Loutet, Samantha J.T.¹ (AUTHOR), Sanger, Alia¹ (AUTHOR), Strong, Kallie² (AUTHOR), Collins, R. Eric² (AUTHOR), Mahmoudi, Nagissa¹ (AUTHOR) nagissa.mahmoudi@mcgill.ca

Quelle: Canadian Journal of Microbiology. 3/10/2025, Vol. 71, p1-9. 9p.

Schlagwörter: *MARINE microbiology, *MICROBIAL communities, *SEA ice, *ARCTIC climate, *ATMOSPHERIC temperature

Effect of microbial community on the formation of flavor components in cigar tobacco leaves during air-curing.

Autoren: Zhang, Lin^1,2 (AUTHOR), Li, Wenlong^1,2 (AUTHOR), Peng, Zheng^1,2 (AUTHOR) zhengpeng@jiangnan.edu.cn, Zhang, Juan^1,2 (AUTHOR) zhangj@jiangnan.edu.cn

Quelle: BMC Microbiology. 1/31/2025, Vol. 25 Issue 1, p1-11. 11p.

Schlagwörter: *BACTERIAL communities, *MICROBIAL communities, *FOLIAR diagnosis, *LIFE sciences, *NUCLEOTIDE sequencing

Impacts of host phylogeny, diet, and geography on the gut microbiome of rodents.

Autoren: Neha, Sufia Akter¹ (AUTHOR) sneha@ttu.edu, Hanson, John D.² (AUTHOR), Wilkinson, Jeremy E.³ (AUTHOR), Bradley, Robert D.^1,4 (AUTHOR), Phillips, Caleb D.^1,4 (AUTHOR)

Quelle: PLoS ONE. 1/16/2025, Vol. 20 Issue 1, p1-18. 18p.

Schlagwörter: *DIETARY patterns, *MICROBIAL communities, *GRANIVORES, *OMNIVORES, *HERBIVORES, *GUT microbiome

Supplementation with Complex Phytonutrients Enhances Rumen Barrier Function and Growth Performance of Lambs by Regulating Rumen Microbiome and Metabolome.

Autoren: Du, Juan^1,2,3,4,5 (AUTHOR) dujuan_ddj@163.com, Wang, Yuan^1,2,3,4,5 (AUTHOR) 16604715667@163.com, Su, Shaohui^1,2,3,4,5 (AUTHOR) wangwenwen2017@emails.imau.edu.cn, Wang, Wenwen^1,2,3,4,5 (AUTHOR) guot199608@163.com, Guo, Tao^1,2,3,4,5 (AUTHOR) yuchaohu1994@163.com, Hu, Yuchao^1,2,3,4,5 (AUTHOR) yinna0420@163.com, Yin, Na^1,2,3,4,5 (AUTHOR) anxiaoping@imau.edu.cn, An, Xiaoping^1,2,3,4,5 (AUTHOR) qijingwei@imau.edu.cn, Qi, Jingwei^1,2,3,4,5 (AUTHOR), Xu, Xuan^6,7 (AUTHOR) wangyuan@imau.edu.cn

Quelle: Animals (2076-2615). Jan2025, Vol. 15 Issue 2, p228. 25p.

Schlagwörter: *URSOLIC acid, *MICROBIAL communities, *CELLULAR signal transduction, *GENE expression, *BODY weight

Decay experiments and microbial community analysis of water lily leaf biofilms: Sediment effects on leaf preservation potential.

Autoren: Palmer, Brianne¹ (AUTHOR) bpalmer@uni-bonn.de, Karačić, Sabina² (AUTHOR), Low, Shook Ling^1,3 (AUTHOR), Janssen, Kathrin² (AUTHOR), Färber, Harald⁴ (AUTHOR), Liesegang, Moritz⁵ (AUTHOR), Bierbaum, Gabriele² (AUTHOR), Gee, Carole T.¹ (AUTHOR) bpalmer@uni-bonn.de

Quelle: PLoS ONE. 12/18/2024, Vol. 19 Issue 12, p1-24. 24p.

Schlagwörter: *MICROBIAL communities, *MINERAL waters, *MINERALS in water, *FUNGAL communities, *BACTERIAL communities, *BIOFILMS

The importance of biofilm contamination control for dental unit waterlines: a multicenter assessment of the microbiota diversity of biofilm in dental unit waterlines.

Autoren: Chen, Piaopiao¹ (AUTHOR), Zeng, Jiang¹ (AUTHOR), Hong, Feiruo² (AUTHOR), Li, Cong² (AUTHOR), Wang, Huimin³ (AUTHOR), Yu, Xuefen² (AUTHOR) yuxf@zju.edu.cn

Quelle: Journal of Oral Microbiology. 2024, Vol. 16 Issue 1, p1-8. 8p.

Schlagwörter: *MICROBIAL communities, *MICROBIAL contamination, *BACTERIAL diversity, *NUCLEOTIDE sequencing, *DENTAL clinics

Microbial community evolution in a lab-scale reactor operated to obtain biomass for biochemical methane potential assays.

Autoren: de la Sovera, Victoria¹ (AUTHOR), Bovio-Winkler, Patricia¹ (AUTHOR), Zinola, Guillermo¹ (AUTHOR), Etchebehere, Claudia¹ (AUTHOR) cetchebehere@iibce.edu.uy

Quelle: Applied Microbiology & Biotechnology. 11/16/2024, Vol. 108 Issue 1, p1-16. 16p.

Schlagwörter: *ANAEROBIC digestion, *MICROBIAL communities, *BIOMASS, *SEQUENCE analysis, *ORGANIC compounds

Linear-regression-based algorithms can succeed at identifying microbial functional groups despite the nonlinearity of ecological function.

Autoren: Zhao, Yuanchen¹ (AUTHOR), Cordero, Otto X.² (AUTHOR), Tikhonov, Mikhail³ (AUTHOR) tikhonov@wustl.edu

Quelle: PLoS Computational Biology. 11/13/2024, Vol. 20 Issue 11, p1-17. 17p.

Schlagwörter: *BIOTIC communities, *MICROBIAL communities, *FUNCTIONAL groups, *DESIGN competitions, *PREDICTION models

Subsurface microbial community structure shifts along the geological features of the Central American Volcanic Arc.

Autoren: Basili, Marco^1,2,3 (AUTHOR), Rogers, Timothy J.¹ (AUTHOR), Nakagawa, Mayuko⁴ (AUTHOR), Yücel, Mustafa⁵ (AUTHOR), de Moor, J. Maarten^6,7 (AUTHOR), Barry, Peter H.⁸ (AUTHOR), Schrenk, Matthew O.⁹ (AUTHOR), Jessen, Gerdhard L.^10,11 (AUTHOR), Sánchez-Murillo, Ricardo¹² (AUTHOR), Zahirovic, Sabin¹³ (AUTHOR), Bekaert, David V.^8,14 (AUTHOR), Ramirez, Carlos J.¹⁵ (AUTHOR), Bastoni, Deborah² (AUTHOR), Cordone, Angelina² (AUTHOR), Lloyd, Karen G.^1,16 (AUTHOR) donato.giovannelli@unina.it, Giovannelli, Donato^2,3,4,8,17 (AUTHOR) lloydk@usc.edu

Quelle: PLoS ONE. 11/13/2024, Vol. 19 Issue 11, p1-17. 17p.

Schlagwörter: *ISLAND arcs, *MICROBIAL communities, *ANALYTICAL geochemistry, *SUBDUCTION, *VOLCANISM

Vaginal microbiota in term pregnant women with differences in cervical ripeness revealed by 2bRAD-M.

Autoren: Lu, Saihu^1,2 (AUTHOR), Wu, Qi^1,3 (AUTHOR), He, Wenzhu¹ (AUTHOR), Du, Xue¹ (AUTHOR), Cui, Qianqian¹ (AUTHOR), Yang, Yuanyuan^1,4,5,6 (AUTHOR) wlj69513@sina.com, Yin, Zongzhi^1,2,5,6 (AUTHOR) dr_yinzongzhi@qq.com

Quelle: BMC Microbiology. 11/1/2024, Vol. 24 Issue 1, p1-11. 11p.

Schlagwörter: *FISHER discriminant analysis, *MICROBIAL communities, *RANDOM forest algorithms, *PREGNANT women, *HUMAN microbiota

Impact of methanogenesis inhibitors on a mixed dechlorinating community in TCE contaminated groundwater.

Autoren: Saffari Ghandehari, Shahrzad¹ (AUTHOR), Hapeman, Cathleen² (AUTHOR), Torrents, Alba¹ (AUTHOR), Kjellerup, Birthe Veno¹ (AUTHOR) bvk@umd.edu

Quelle: Bioremediation Journal. Oct2024, p1-9. 9p. 2 Illustrations.

Schlagwörter: *MICROBIAL communities, *METHANOGENS, *TRICHLOROETHYLENE, *GROUNDWATER, *BIOREMEDIATION, *IN situ bioremediation

Simulation of 69 microbial communities indicates sequencing depth and false positives are major drivers of bias in prokaryotic metagenome-assembled genome recovery.

Autoren: Rocha, Ulisses¹ (AUTHOR) ulisses.rocha@ufz.de, Kasmanas, Jonas Coelho¹ (AUTHOR), Toscan, Rodolfo¹ (AUTHOR), Sanches, Danilo S.² (AUTHOR), Magnusdottir, Stefania¹ (AUTHOR), Saraiva, Joao Pedro¹ (AUTHOR) ulisses.rocha@ufz.de

Quelle: PLoS Computational Biology. 10/22/2024, Vol. 20 Issue 10, p1-27. 27p.

Schlagwörter: *MICROBIAL genomes, *MICROBIAL communities, *MICROBIAL diversity, *ERROR rates, *SPECIES diversity, *METAGENOMICS

The contribution of seasonal variations and Zostera marina presence to the bacterial community assembly of seagrass bed sediments.

Autoren: Chen, Jun¹ (AUTHOR), Li, Xinqi¹ (AUTHOR), Wang, Hongzhen¹ (AUTHOR), Tang, Liuqing² (AUTHOR), Xue, Song¹ (AUTHOR), Xin, Jiayi¹ (AUTHOR), Zang, Yu³ (AUTHOR) yuzang@outlook.com, Tang, Xuexi^1,4 (AUTHOR) tangxx@ouc.edu.cn

Quelle: BMC Microbiology. 10/11/2024, Vol. 24 Issue 1, p1-14. 14p.

Schlagwörter: *SEAGRASS restoration, *MICROBIAL communities, *RHIZOBACTERIA, *STOCHASTIC processes, *NUCLEOTIDE sequencing, *ZOSTERA marina, *SEAGRASSES

Disruption of bacterial interactions and community assembly in Babesia-infected Haemaphysalis longicornis following antibiotic treatment.

Autoren: Kratou, Myriam¹ (AUTHOR) mariem.kratou@hotmail.com, Maitre, Apolline^2,3,4 (AUTHOR), Abuin-Denis, Lianet^2,5 (AUTHOR), Piloto-Sardiñas, Elianne^2,6 (AUTHOR), Corona-Guerrero, Ivan^7,8 (AUTHOR), Cano-Argüelles, Ana Laura⁹ (AUTHOR), Wu-Chuang, Alejandra² (AUTHOR), Bamgbose, Timothy^10,11 (AUTHOR), Almazan, Consuelo^7,8 (AUTHOR), Mosqueda, Juan^7,8 (AUTHOR), Obregón, Dasiel¹² (AUTHOR), Mateos-Hernández, Lourdes² (AUTHOR), Said, Mourad Ben^1,13 (AUTHOR), Cabezas-Cruz, Alejandro² (AUTHOR) alejandro.cabezas@vet-alfort.fr

Quelle: BMC Microbiology. 9/5/2024, Vol. 24 Issue 1, p1-19. 19p.

Schlagwörter: *TICK-borne diseases, *MICROBIAL communities, *BACTERIAL communities, *MICROBIAL metabolism, *FUNCTIONAL analysis, *BABESIA

Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data.

Autoren: Aizpurua, Ostaizka¹ (AUTHOR) ostaizka.aizpurua@sund.ku.dk, Dunn, Robert R.² (AUTHOR), Hansen, Lars H.³ (AUTHOR), Gilbert, M. T. P.^1,4 (AUTHOR), Alberdi, Antton¹ (AUTHOR)

Quelle: Critical Reviews in Biotechnology. Sep2024, Vol. 44 Issue 6, p1164-1182. 19p.

Schlagwörter: *MICROBIAL communities, *METAGENOMICS, *RESEARCH personnel, *ELECTRONIC data processing, *STATISTICS

Microbiomes of three coral species in the Mexican Caribbean and their shifts associated with the Stony Coral Tissue Loss Disease.

Autoren: Arriaga-Piñón, Zita P.¹ (AUTHOR), Aguayo-Leyva, J. Eduardo² (AUTHOR), Álvarez-Filip, Lorenzo³ (AUTHOR), Banaszak, Anastazia T.³ (AUTHOR), Aguirre-Macedo, Ma. Leopoldina¹ (AUTHOR), Paz-García, David A.² (AUTHOR) jose.garcia@cinvestav.mx, García-Maldonado, José Q.¹ (AUTHOR) dpaz@cibnor.mx

Quelle: PLoS ONE. 8/26/2024, Vol. 19 Issue 8, p1-14. 14p.

Schlagwörter: *SCLERACTINIA, *MICROBIAL communities, *GAMMAPROTEOBACTERIA, *PHOTOBACTERIUM, *CORALS

Alterations in the gut microbiota community are associated with childhood obesity and precocious puberty.

Autoren: Wang, Li¹ (AUTHOR), Yi, Qin¹ (AUTHOR), Xu, Hao^1,2 (AUTHOR), Liu, Huiwen¹ (AUTHOR), Tan, Bin¹ (AUTHOR), Deng, Hongrong¹ (AUTHOR), Chen, Yunxia¹ (AUTHOR), Wang, Rui¹ (AUTHOR), Tang, Fang³ (AUTHOR), Cheng, Xinran³ (AUTHOR) Chinacxr1216@sina.com, Zhu, Jing¹ (AUTHOR) jingzhu@cqmu.edu.cn

Quelle: BMC Microbiology. 8/24/2024, Vol. 24 Issue 1, p1-10. 10p.

Schlagwörter: *RECEIVER operating characteristic curves, *MICROBIAL communities, *BODY mass index, *GUT microbiome, *CHILDHOOD obesity, *PUBERTY, *PRECOCIOUS puberty

Natural Foraging Selection and Gut Microecology of Two Subterranean Rodents from the Eurasian Steppe in China.

Autoren: Shang, Zhenghaoni^1,2,3 (AUTHOR) shangzhn1997@163.com, Chen, Kai^1,2,3 (AUTHOR) ckai1414@163.com, Han, Tingting^1,2,3 (AUTHOR) hantingting1015@163.com, Bu, Fan^1,2,3 (AUTHOR) bufanimau@163.com, Sun, Shanshan^1,2,3 (AUTHOR) sunshanshan557@163.com, Zhu, Na^1,2,3 (AUTHOR) jvn0397@163.com, Man, Duhu⁴ (AUTHOR) mantou08@126.com, Yang, Ke⁵ (AUTHOR) yangke19961006@163.com, Yuan, Shuai^1,2,3 (AUTHOR) yuanshuai2020@163.com, Fu, Heping^1,2,3 (AUTHOR) yuanshuai2020@163.com

Quelle: Animals (2076-2615). Aug2024, Vol. 14 Issue 16, p2334. 20p.

Schlagwörter: *MICROBIAL ecology, *MICROBIAL communities, *ZOKORS, *GUT microbiome, *MICROBIAL diversity