Utilizing Large language models to select literature for meta-analysis shows workload reduction while maintaining a similar recall level as manual curation.

Authors: Cai X; Department of Molecular Cell Biology & Immunology, Amsterdam Infection & Immunity Institute and Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. x.cai@amsterdamumc.nl., Geng Y; Department of Neurosurgery, Jinling Hospital, Nanjing, China.; Department of Neurosurgery, Affiliated Jingling Hospital, Nanjing Medical University, Nanjing, China., Du Y; Department of System Engineering and Engineering Management, The Chinese University of Hong Kong, Hong Kong, China., Westerman B; Department of Neurosurgery, Cancer Center Amsterdam, Brain Tumor Center Amsterdam, Amsterdam UMC Location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands., Wang D; Department of Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, UK. duolao.wang@lstmed.ac.uk., Ma C; Department of Neurosurgery, Jinling Hospital, Nanjing, China. machiyuan_nju@126.com.; Department of Neurosurgery, Affiliated Jingling Hospital, Nanjing Medical University, Nanjing, China. machiyuan_nju@126.com.; School of Medicine, Southeast University, Nanjing, China. machiyuan_nju@126.com.; Department of Neurosurgery, Affiliated Jinling Hospital, Medical School of Nanjing University, Nanjing, China. machiyuan_nju@126.com.; Department of Neurosurgery, Jinling Hospital, the First School of Clinical Medicine, Southern Medical University, Nanjing, China. machiyuan_nju@126.com., Vallejo JJG; Department of Molecular Cell Biology & Immunology, Amsterdam Infection & Immunity Institute and Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.

Source: BMC medical research methodology [BMC Med Res Methodol] 2025 Apr 28; Vol. 25 (1), pp. 116. Date of Electronic Publication: 2025 Apr 28.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100968545 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2288 (Electronic) Linking ISSN: 14712288 NLM ISO Abbreviation: BMC Med Res Methodol Subsets: MEDLINE

MeSH Terms: Workload* , Meta-Analysis as Topic* , Data Curation*/methods , Biomedical Research*/methods, Humans ; Evidence-Based Medicine/methods ; Large Language Models

Understanding the value of curation: A survey of US data repository curation practices and perceptions.

Authors: Johnston LR; Data, Academic Planning & Institutional Research, University of Wisconsin Madison, Madison, Wisconsin, United States of America., Curty R; Research Data Services, Library, University of California Santa Barbara, Santa Barbara, California, United States of America., Braxton SM; University Library, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America., Carlson J; University Libraries, University at Buffalo, Buffalo, New York, United States of America., Hadley H; Research and Teaching Services, Library, Princeton University, Princeton, New Jersey, United States of America., Lafferty-Hess S; University Libraries Center for Data and Visualization Sciences, Duke University, Durham, North Carolina, United States of America., Luong H; University Library, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America., Petters JL; Data Management and Curation Services, Data Services, University Libraries, Virginia Tech, Virginia, United States of America., Kozlowski WA; Research Data and Open Scholarship, Cornell University Library, Cornell University, Ithaca, New York, United States of America.

Source: PloS one [PLoS One] 2024 Jun 14; Vol. 19 (6), pp. e0301171. Date of Electronic Publication: 2024 Jun 14 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Data Curation*, Humans ; Surveys and Questionnaires ; United States ; Information Dissemination ; Data Accuracy ; Databases, Factual ; Reproducibility of Results

OMD Curation Toolkit: a workflow for in-house curation of public omics datasets.

Authors: Piquer-Esteban S; Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain. samuel.piquer@uv.es.; Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain. samuel.piquer@uv.es., Arnau V; Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain.; Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain.; Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain., Diaz W; Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain.; Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain.; Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain., Moya A; Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain. andres.moya@uv.es.; Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain. andres.moya@uv.es.; Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain. andres.moya@uv.es.

Source: BMC bioinformatics [BMC Bioinformatics] 2024 May 09; Vol. 25 (1), pp. 184. Date of Electronic Publication: 2024 May 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

MeSH Terms: Workflow* , Software* , Data Curation*/methods, Metadata ; Databases, Genetic ; Genomics/methods ; Computational Biology/methods

A study on formalizing the knowledge of data curation activities across different fields.

Authors: Minamiyama Y; Research Center for Open Science and Data Platform, National Institute of Informatics, Chiyoda-City, Tokyo, Japan., Takeda H; Principles of Informatics Research Division, National Institute of Informatics, Chiyoda-City, Tokyo, Japan., Hayashi M; Research Center for Open Science and Data Platform, National Institute of Informatics, Chiyoda-City, Tokyo, Japan., Asaoka M; Research Center for Open Science and Data Platform, National Institute of Informatics, Chiyoda-City, Tokyo, Japan., Yamaji K; Research Center for Open Science and Data Platform, National Institute of Informatics, Chiyoda-City, Tokyo, Japan.

Source: PloS one [PLoS One] 2024 Apr 25; Vol. 19 (4), pp. e0301772. Date of Electronic Publication: 2024 Apr 25 (Print Publication: 2024).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Data Curation*/methods , Information Dissemination*/methods, Humans ; Knowledge ; Internet

scDOT: enhancing single-cell RNA-Seq data annotation and uncovering novel cell types through multi-reference integration.

Authors: Xiong YX; School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China.; Key Laboratory of Nonlinear Analysis & Applications (Ministry of Education), Central China Normal University, Wuhan 430079, China., Zhang XF; School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China.; Key Laboratory of Nonlinear Analysis & Applications (Ministry of Education), Central China Normal University, Wuhan 430079, China.

Source: Briefings in bioinformatics [Brief Bioinform] 2024 Jan 22; Vol. 25 (2).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH Terms: Data Curation* , Single-Cell Gene Expression Analysis*, Humans ; Benchmarking ; Learning ; Research Personnel

Curating models from BioModels: Developing a workflow for creating OMEX files.

Authors: Xu J; Department of Bioengineering, University of Washington, Seattle, WA, United States of America., Smith L; Department of Bioengineering, University of Washington, Seattle, WA, United States of America.

Source: PloS one [PLoS One] 2024 Dec 05; Vol. 19 (12), pp. e0314875. Date of Electronic Publication: 2024 Dec 05 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Workflow*, Models, Biological ; Systems Biology/methods ; Reproducibility of Results ; Software ; Databases, Factual ; Humans ; Computer Simulation ; Computational Biology/methods ; Programming Languages ; Data Curation/methods

Understanding the value of curation: A survey of researcher perspectives of data curation services from six US institutions.

Authors: Marsolek W; Univeristy of Minnesota Libraries, University of Minnesota, Minneapolis, MN, United States of America., Wright SJ; Cornell University Library, Cornell University, Ithaca, NY, United States of America., Luong H; University Library, University of Illinois-Urbana Champaign, Urbana, IL, United States of America., Braxton SM; University Library, University of Illinois-Urbana Champaign, Urbana, IL, United States of America., Carlson J; University at Buffalo Libraries, University at Buffalo, Buffalo, NY, United States of America., Lafferty-Hess S; Duke University Libraries, Duke University, Durham, NC, United States of America.

Source: PloS one [PLoS One] 2023 Nov 01; Vol. 18 (11), pp. e0293534. Date of Electronic Publication: 2023 Nov 01 (Print Publication: 2023).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Data Curation* , Information Dissemination*, Humans ; Research Personnel ; Surveys and Questionnaires ; Probability

Perceptions of human movement researchers and clinicians on the barriers and facilitators to health research data sharing in Africa.

Authors: Obiora, Oluchukwu Loveth^1,2 (AUTHOR) Lovethegboka@yahoo.com, Shead, Dorothy Agnes^1,3 (AUTHOR), Olivier, Benita^1,2 (AUTHOR)

Source: Physiotherapy Theory & Practice. Mar2024, Vol. 40 Issue 3, p516-527. 12p.

Subject Terms: *DATA curation, *DATABASES, *MEDICAL information storage & retrieval systems, *ATTITUDES of medical personnel, *RESEARCH methodology, *MANAGEMENT of medical records, *INTERVIEWING, *QUALITATIVE research, *COST benefit analysis, *DESCRIPTIVE statistics, *INTERPROFESSIONAL relations, *RESEARCH funding, *JUDGMENT sampling, *THEMATIC analysis, *CONTENT analysis, *MEDICAL research

Geographic Terms: AFRICA

Development of an Automated Workflow for Screening the Assembly and Host–Guest Behavior of Metal‐Organic Cages Towards Accelerated Discovery.

Authors: Basford, Annabel R.¹ (AUTHOR), Bernardino, Aaron H.¹ (AUTHOR), Teeuwen, Paula C. P.² (AUTHOR), Egleston, Benjamin D.¹ (AUTHOR), Humphreys, Joshua¹ (AUTHOR), Jelfs, Kim. E.¹ (AUTHOR), Nitschke, Jonathan R.² (AUTHOR), Riddell, Imogen A.³ (AUTHOR) imogen.riddell@manchester.ac.uk, Greenaway, Rebecca L.¹ (AUTHOR) r.greenaway@imperial.ac.uk

Source: Angewandte Chemie International Edition. Apr2025, p1. 11p. 9 Illustrations.

Subject Terms: *DATA curation, *WORKFLOW, *AUTOMATION, *CATALYSIS

Standardizing Extracted Data Using Automated Application of Controlled Vocabularies.

Authors: Foster, Caroline¹, Wignall, Jessica¹, Kovach, Samuel¹, Choksi, Neepa², Allen, Dave², Trgovcich, Joanne¹, Rochester, Johanna R.¹, Ceger, Patricia², Daniel, Amber², Hamm, Jon², Truax, Jim², Blake, Bevin³, McIntyre, Barry³, Sutherland, Vicki³, Stout, Matthew D.³, Kleinstreuer, Nicole⁴

Source: Environmental Health Perspectives. Feb2024, Vol. 132 Issue 2, p027006-1-027006-13. 13p.

Subject Terms: *Dose-response relationship in biochemistry, *Toxicity testing, Subject headings, Medical information storage & retrieval systems, Drug toxicity, Reproductive health, Artificial intelligence, Data curation, Descriptive statistics, Medical subject headings, Metadata, Automation, Vocabulary, Fetal development, Data analysis software, Quality assurance

Help biocurators to maximize the reach of your data.

Authors: Holmes, Alexander¹ (AUTHOR) ah30@sanger.ac.uk, Carvalho-Silva, Denise¹ (AUTHOR), Sondka, Zbyslaw¹ (AUTHOR), Ahmed, Madiha¹ (AUTHOR), Argasinska, Joanna¹ (AUTHOR), Lyne, Rachel¹ (AUTHOR), Sangrador-Vegas, Amaia¹ (AUTHOR), Ward, Sari¹ (AUTHOR)

Source: PLoS Biology. 1/25/2024, Vol. 22 Issue 1, p1-4. 4p.

Subject Terms: *SCIENCE databases, *DATA curation, *CATALOGS, *CATALOGING

Searches as data: archiving and sharing search strategies using an institutional data repository.

Authors: Rod, Alisa B.¹ alisa.rod@mcgill.ca, Boruff, Jill T.² jill.boruff@mcgill.ca

Source: Journal of the Medical Library Association. Jan2024, Vol. 112 Issue 1, p42-47. 6p.

Subject Terms: *DATA curation, *DATA warehousing, *PUBLISHING, *PROFESSIONS, *LIBRARY science, *ACADEMIC libraries, *DATABASE searching, *SYSTEMATIC reviews, *LIBRARY public services, *MEDICAL care research, *DATABASE management, *INFORMATION retrieval, *COMMUNICATION, *DATA mining, RESEARCH evaluation

Geographic Terms: QUEBEC (Province)

PRESERVE, PROTECT, AND PASS ON: Teaching Digital Preservation at the Library.

Authors: Kowalski, Meghan meghan.kowalski@outlook.com

Source: Computers in Libraries. Mar2025, Vol. 45 Issue 2, p16-19. 4p. 5 Black and White Photographs.

Subject Terms: *Documentation, *Data curation, *Metadata, *Digital libraries, Handwriting, Adult education workshops

Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences.

Authors: Blackwell GA; EMBL-EBI, Wellcome Genome Campus, Hinxton, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom., Hunt M; EMBL-EBI, Wellcome Genome Campus, Hinxton, United Kingdom.; Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom., Malone KM; EMBL-EBI, Wellcome Genome Campus, Hinxton, United Kingdom., Lima L; EMBL-EBI, Wellcome Genome Campus, Hinxton, United Kingdom., Horesh G; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom., Alako BTF; EMBL-EBI, Wellcome Genome Campus, Hinxton, United Kingdom., Thomson NR; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.; London School of Hygiene & Tropical Medicine, London, United Kingdom., Iqbal Z; EMBL-EBI, Wellcome Genome Campus, Hinxton, United Kingdom.

Source: PLoS biology [PLoS Biol] 2021 Nov 09; Vol. 19 (11), pp. e3001421. Date of Electronic Publication: 2021 Nov 09 (Print Publication: 2021).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

MeSH Terms: Biodiversity* , Data Curation*, Bacteria/*genetics , DNA, Bacterial/*genetics, Base Sequence ; Drug Resistance, Bacterial/genetics ; Species Specificity

The Effects of Research Data Management Services: Associating the Data Curation Lifecycle with Open Research Output.

Authors: Pares, Nicolas¹ nicolas.pares@du.edu, Organisciak, Peter¹ Peter.Organisciak@du.edu

Source: College & Research Libraries. Sep2023, Vol. 84 Issue 5, p751-766. 16p.

Subject Terms: *DATA management, *DATA curation, *CHI-squared test, *OPEN data movement, *INFORMATION sharing

Big data curation framework: Curation actions and challenges.

Authors: Yoon, Ayoung¹ (AUTHOR) ayyoon@iupui.edu, Kim, Jihyun² (AUTHOR), Donaldson, Devan Ray³ (AUTHOR)

Source: Journal of Information Science. Feb2025, Vol. 51 Issue 1, p205-223. 19p.

Subject Terms: *Data libraries, *Big data, *Data curation, *Archives

Under whose wings? A conceptual model for incorporating historical sovereignty information in biodiversity data.

Authors: Cheng, Yi‐Yun¹ yiyun.cheng@rutgers.edu

Source: Journal of the Association for Information Science & Technology. Feb2025, Vol. 76 Issue 2, p428-446. 19p.

Subject Terms: *Database management, *Data curation, *Bibliographical citations, *Bibliography, *Content mining, Bird classification, Terms & phrases, Historical geography, Ecosystems, Decision making, Mathematical models, Theory

A cultural heritage data curation framework for knowledge discovery.

Authors: He, Ruijie ruijiehe_ch@163.com, Wang, Xiaoguang wxguang@whu.edu.cn

Source: Information Research. 2025 Special issue, Vol. 30, p398-412. 15p. 2 Diagrams, 2 Charts.

Subject Terms: *CULTURAL property, *DATA curation, *DATA mining, *INFORMATION sharing, *COPYRIGHT

Data quality assurance practices in research data repositories—A systematic literature review. An Annual Review of Information Science and Technology (ARIST) paper.

Authors: Stvilia, Besiki¹ bstvilia@fsu.edu, Pang, Yuanying¹, Lee, Dong Joon², Gunaydin, Fatih¹

Source: Journal of the Association for Information Science & Technology. Jan2025, Vol. 76 Issue 1, p238-261. 24p.

Subject Terms: *Medical information storage & retrieval systems, *Digital technology, *Documentation, *Data curation, *Content analysis, *Electronic health records, *Information science, *Conceptual structures, *Metadata, *Communication, *Data quality, *Training, Research funding, Workflow, Thematic analysis, Ability, Quality assurance, Rules

Harnessing clinical annotations to improve deep learning performance in prostate segmentation.

Authors: Sarma KV; University of California, Los Angeles, Los Angeles, CA, United States of America., Raman AG; University of California, Los Angeles, Los Angeles, CA, United States of America.; Western University of Health Sciences, Pomona, CA, United States of America., Dhinagar NJ; University of California, Los Angeles, Los Angeles, CA, United States of America.; Keck School of Medicine, University of Southern California, Los Angeles, CA, United States of America., Priester AM; University of California, Los Angeles, Los Angeles, CA, United States of America., Harmon S; National Cancer Institute, National Institutes of Health, Bethesda, MD, United States of America.; Clinical Research Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, United States of America., Sanford T; National Cancer Institute, National Institutes of Health, Bethesda, MD, United States of America.; SUNY Upstate Medical Center, Syracuse, NY, United States of America., Mehralivand S; National Cancer Institute, National Institutes of Health, Bethesda, MD, United States of America., Turkbey B; National Cancer Institute, National Institutes of Health, Bethesda, MD, United States of America., Marks LS; University of California, Los Angeles, Los Angeles, CA, United States of America., Raman SS; University of California, Los Angeles, Los Angeles, CA, United States of America., Speier W; University of California, Los Angeles, Los Angeles, CA, United States of America., Arnold CW; University of California, Los Angeles, Los Angeles, CA, United States of America.

Source: PloS one [PLoS One] 2021 Jun 25; Vol. 16 (6), pp. e0253829. Date of Electronic Publication: 2021 Jun 25 (Print Publication: 2021).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Data Curation* , Databases, Factual* , Deep Learning* , Tomography, X-Ray Computed*, Prostate/*diagnostic imaging, Humans ; Male ; Retrospective Studies