Phylogenetic analysis of Asiatic species in the tropical genus Beilschmiedia (Lauraceae).

Autorzy: Zhu, Wen¹ (AUTHOR), Ma, Jurong² (AUTHOR), Tan, Yunhong³ (AUTHOR) tyh@xtbg.org.cn, Song, Yu² (AUTHOR) songyu@gxnu.edu.cn, Xin, Peiyao¹ (AUTHOR) xpytgyx@163.com

Źródło: BMC Genomics. 3/8/2025, Vol. 26 Issue 1, p1-13. 13p.

Hasła: *MICROSATELLITE repeats, *COMPARATIVE genomics, *TROPICAL forests, *LIFE sciences, *BAYESIAN field theory, *CHLOROPLAST DNA

Tracing the path from conservation to expansion evolutionary insights into NLR genes in oleaceae.

Autorzy: Parvez, Saba¹ (AUTHOR), Asif, Maryam¹ (AUTHOR), Ahmad, Alizay¹ (AUTHOR), Javaid, Iqra¹ (AUTHOR), Rasheed, Muhammad Zaman¹ (AUTHOR), Iftikhar, Romana¹ (AUTHOR), Aljarba, Nada H.² (AUTHOR), Zafar, Rabia¹ (AUTHOR), sarwar, Aqsa¹ (AUTHOR), Khan, Rao Sohail Ahmed¹ (AUTHOR), Serfraz, Saad¹ (AUTHOR) serfraz.saad@gmail.com

Źródło: BMC Plant Biology. 2/26/2025, Vol. 25 Issue 1, p1-16. 16p.

Hasła: *COMPARATIVE genomics, *ASH (Tree), *CONSERVATION genetics, *LIFE sciences, *OLEACEAE

Chromosome level assemblies of Nakaseomyces (Candida) bracarensis uncover two distinct clades and define its adhesin repertoire.

Autorzy: Marcet-Houben, Marina^1,2,3 (AUTHOR), Księżopolska, Ewa^1,2,3 (AUTHOR), Gabaldón, Toni^1,2,3,4 (AUTHOR) toni.gabaldon@bsc.es

Źródło: BMC Genomics. 11/7/2024, Vol. 25 Issue 1, p1-13. 13p.

Hasła: *COMPARATIVE genomics, *CHROMOSOMES, *CANDIDA, *GENOMICS, *SPECIES

The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation.

Autorzy: Kosch, Tiffany A.¹ (AUTHOR) tiffany.kosch@gmail.com, Torres-Sánchez, María² (AUTHOR) torressanchez.maria@gmail.com, Liedtke, H. Christoph³ (AUTHOR), Summers, Kyle⁴ (AUTHOR), Yun, Maximina H.^5,6 (AUTHOR), Crawford, Andrew J.^7,8 (AUTHOR), Maddock, Simon T.^9,10 (AUTHOR), Ahammed, Md. Sabbir¹¹ (AUTHOR), Araújo, Victor L. N.⁷ (AUTHOR), Bertola, Lorenzo V.¹² (AUTHOR), Bucciarelli, Gary M.¹³ (AUTHOR), Carné, Albert¹⁴ (AUTHOR), Carneiro, Céline M.¹⁵ (AUTHOR), Chan, Kin O.¹⁶ (AUTHOR), Chen, Ying¹⁷ (AUTHOR), Crottini, Angelica^18,19,20 (AUTHOR), da Silva, Jessica M.^21,22 (AUTHOR), Denton, Robert D.²³ (AUTHOR), Dittrich, Carolin²⁴ (AUTHOR), Espregueira Themudo, Gonçalo²⁵ (AUTHOR)

Źródło: BMC Genomics. 11/1/2024, Vol. 25 Issue 1, p1-19. 19p.

Hasła: *COMPARATIVE genomics, *BIOLOGICAL extinction, *GERMPLASM, *BIODIVERSITY conservation, *GENOME size, *GENETIC sex determination

Rethinking asexuality: the enigmatic case of functional sexual genes in Lepraria (Stereocaulaceae).

Autorzy: Doellman, Meredith M.¹ (AUTHOR), Sun, Yukun¹ (AUTHOR), Barcenas-Peña, Alejandrina¹ (AUTHOR), Lumbsch, H. Thorsten¹ (AUTHOR), Grewe, Felix¹ (AUTHOR) fgrewe@fieldmuseum.org

Źródło: BMC Genomics. 10/26/2024, Vol. 25 Issue 1, p1-15. 15p.

Hasła: *SEXUAL cycle, *COMPARATIVE genomics, *GENOMICS, *ASEXUAL reproduction, *MEIOSIS, *REPRODUCTION

Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history.

Autorzy: Mazéas, Lisa¹ (AUTHOR), Bouguerba-Collin, Ahlem¹ (AUTHOR), Cock, J. Mark¹ (AUTHOR), Denoeud, France² (AUTHOR), Godfroy, Olivier¹ (AUTHOR), Brillet-Guéguen, Loraine^1,3 (AUTHOR), Barbeyron, Tristan¹ (AUTHOR), Lipinska, Agnieszka P.⁴ (AUTHOR), Delage, Ludovic¹ (AUTHOR), Corre, Erwan³ (AUTHOR), Drula, Elodie^5,6,7 (AUTHOR), Henrissat, Bernard^5,6,8 (AUTHOR), Czjzek, Mirjam¹ (AUTHOR), Terrapon, Nicolas^5,6 (AUTHOR), Hervé, Cécile¹ (AUTHOR) cecile.herve@sb-roscoff.fr

Źródło: BMC Genomics. 10/10/2024, Vol. 25 Issue 1, p1-19. 19p.

Hasła: *COMPARATIVE genomics, *EXTRACELLULAR enzymes, *GENE families, *SULFOTRANSFERASES, *EXTRACELLULAR matrix

Genomes of diverse Actinidia species provide insights into cis-regulatory motifs and genes associated with critical traits.

Autorzy: Li, Xiaolong^1,2 (AUTHOR), Huo, Liuqing^1,2 (AUTHOR), Li, Xinyi^1,2 (AUTHOR), Zhang, Chaofan³ (AUTHOR), Gu, Miaofeng^1,2 (AUTHOR), Fan, Jialu⁴ (AUTHOR), Xu, Changbin^1,2 (AUTHOR), Gong, Jinli^1,2 (AUTHOR), Hu, Xiaoli^1,2 (AUTHOR), Zheng, Yi⁴ (AUTHOR), Sun, Xuepeng^1,2 (AUTHOR) xs57@zafu.edu.cn

Źródło: BMC Biology. 9/11/2024, Vol. 22 Issue 1, p1-16. 16p.

Hasła: *GENE families, *COMPARATIVE genomics, *PAN-genome, *VITAMIN C, *FRUIT development, *KIWIFRUIT

Multipla: Multiscale Pangenomic Locus Analysis.

Autorzy: van den Brandt, A.^1,2 (AUTHOR), Ståhlbom, E.^3,4 (AUTHOR), van Workum, F.J.M.² (AUTHOR), van de Wetering, H.¹ (AUTHOR), Lundström, C.^3,4,5 (AUTHOR), Smit, S.² (AUTHOR), Vilanova, A.¹ (AUTHOR)

Źródło: Computer Graphics Forum. May2025, p1. 12p. 10 Illustrations.

Hasła: *ALGORITHMS, PAN-genome, COMPARATIVE genomics, DATA visualization, GENETIC variation, MULTIPLE scale method, LOCUS (Mathematics)

Marine sponge microbe provides insights into evolution and virulence of the tubercle bacillus.

Autorzy: Pidot, Sacha J.¹ (AUTHOR) sacha.pidot@unimelb.edu.au, Klatt, Stephan² (AUTHOR), Ates, Louis S.³ (AUTHOR), Frigui, Wafa³ (AUTHOR), Sayes, Fadel³ (AUTHOR), Majlessi, Laleh³ (AUTHOR), Izumi, Hiroshi⁴ (AUTHOR), Monk, Ian R.¹ (AUTHOR), Porter, Jessica L.¹ (AUTHOR), Bennett-Wood, Vicki¹ (AUTHOR), Seemann, Torsten¹ (AUTHOR), Otter, Ashley⁵ (AUTHOR), Taiaroa, George⁶ (AUTHOR), Cook, Gregory M.⁶ (AUTHOR), West, Nicholas⁴ (AUTHOR), Tobias, Nicholas J.¹ (AUTHOR), Fuerst, John A.⁴ (AUTHOR), Stutz, Michael D.⁷ (AUTHOR), Pellegrini, Marc⁷ (AUTHOR), McConville, Malcolm² (AUTHOR)

Źródło: PLoS Pathogens. 8/29/2024, Vol. 20 Issue 8, p1-27. 27p.

Hasła: *BCG vaccines, *COMPARATIVE genomics, *TUBERCULOSIS vaccines, *DNA vaccines, *COMMUNICABLE diseases, *MYCOBACTERIUM tuberculosis, *MYCOBACTERIUM bovis, *MOUNTAIN soils

Genomic diversity in Paenibacillus polymyxa: unveiling distinct species groups and functional variability.

Autorzy: Wallner, Adrian¹ (AUTHOR) adrian.wallner@ait.ac.at, Antonielli, Livio¹ (AUTHOR), Mesguida, Ouiza^2,3 (AUTHOR), Rey, Patrice² (AUTHOR), Compant, Stéphane¹ (AUTHOR)

Źródło: BMC Genomics. 7/25/2024, Vol. 25 Issue 1, p1-11. 11p.

Hasła: *FUNCTIONAL groups, *COMPARATIVE genomics, *PAENIBACILLUS, *NITROGEN fixation, *SECONDARY metabolism, *SPECIES

Puzzle Hi-C: An accurate scaffolding software.

Autorzy: Lin, Guoliang¹ (AUTHOR), Huang, Zhiru² (AUTHOR), Yue, Tingsong¹ (AUTHOR), Chai, Jing¹ (AUTHOR), Li, Yan¹ (AUTHOR), Yang, Huimin¹ (AUTHOR), Qin, Wanting¹ (AUTHOR), Yang, Guobing¹ (AUTHOR), Murphy, Robert W.³ (AUTHOR), Zhang, Ya-ping^1,4 (AUTHOR) jingluo@ynu.edu.cn, Zhang, Zijie^1,4 (AUTHOR) jingluo@ynu.edu.cn, Zhou, Wei⁵ (AUTHOR) jingluo@ynu.edu.cn, Luo, Jing^1,4 (AUTHOR) jingluo@ynu.edu.cn

Źródło: PLoS ONE. 7/15/2024, Vol. 19 Issue 7, p1-14. 14p.

Hasła: *COMPARATIVE genomics, *GENOMICS, *PUZZLES, *CHROMOSOMES, *COMPUTER software

Comparative genomics of Tn6411 transposons carrying the blaIMP-1 gene in Pseudomonas aeruginosa.

Autorzy: Zheng, Lin¹ (AUTHOR) xuejung2021@163.com, Wang, Zixian¹ (AUTHOR), Guo, Jingyi² (AUTHOR), Guan, Jiayao³ (AUTHOR), Lu, Gejin¹ (AUTHOR), Jing, Jie¹ (AUTHOR), Sun, Shiwen¹ (AUTHOR), Sun, Yang¹ (AUTHOR), Ji, Xue¹ (AUTHOR), Jiang, Bowen¹ (AUTHOR), Wang, Yongjie⁴ (AUTHOR), Zhao, Chuanfang⁵ (AUTHOR), Zhu, Lingwei¹ (AUTHOR) xuejung2021@163.com, Guo, Xuejun¹ (AUTHOR) xuejung2021@163.com

Źródło: PLoS ONE. 7/9/2024, Vol. 19 Issue 7, p1-9. 9p.

Hasła: *COMPARATIVE genomics, *PSEUDOMONAS aeruginosa, *TRANSPOSONS, *CARBAPENEM-resistant bacteria, *WHOLE genome sequencing, *MOBILE genetic elements, *BACTERIAL genomes

Comparative genomics of quinolone-resistant Escherichia coli from broilers and humans in Norway.

Autorzy: Slettemeås, Jannice Schau¹ (AUTHOR) jannice.schau-slettemeas@vetinst.no, Sekse, Camilla¹ (AUTHOR), Sunde, Marianne¹ (AUTHOR), Norström, Madelaine¹ (AUTHOR), Wester, Astrid Louise^2,3 (AUTHOR), Naseer, Umaer² (AUTHOR), Simonsen, Gunnar Skov^4,5 (AUTHOR), Ulstad, Charlotte Rosenberg² (AUTHOR), Urdahl, Anne Margrete¹ (AUTHOR), Lagesen, Karin¹ (AUTHOR)

Źródło: BMC Microbiology. 7/6/2024, Vol. 24 Issue 1, p1-12. 12p.

Hasła: *COMPARATIVE genomics, *ESCHERICHIA coli, *BROILER chickens, *LIVESTOCK productivity, *DRUG resistance in microorganisms, *POULTRY farms, *HUMAN beings, *POULTRY growth

Hasła geograficzne: NORWAY

An integrated comparative genomics, subtractive proteomics and immunoinformatics framework for the rational design of a Pan-Salmonella multi-epitope vaccine.

Autorzy: Bhattacharjee, Arittra¹ (AUTHOR), Hosen, Md. Rakib² (AUTHOR), Lamisa, Anika Bushra¹ (AUTHOR), Ahammad, Ishtiaque¹ (AUTHOR), Chowdhury, Zeshan Mahmud¹ (AUTHOR), Jamal, Tabassum Binte¹ (AUTHOR), Sohag, Md. Mehadi Hasan² (AUTHOR), Hossain, Mohammad Uzzal¹ (AUTHOR), Das, Keshob Chandra³ (AUTHOR), Keya, Chaman Ara⁴ (AUTHOR), Salimullah, Md³ (AUTHOR) salim2969@gmail.com

Źródło: PLoS ONE. 7/3/2024, Vol. 19 Issue 7, p1-22. 22p.

Hasła: *COMPARATIVE genomics, *SALMONELLA diseases, *T cell receptors, *PROTEOMICS, *MOLECULAR dynamics, *T cells, *VACCINES

Genome-wide characterization and metabolite profiling of Cyathus olla: insights into the biosynthesis of medicinal compounds.

Autorzy: Xie, Xiuchao¹ (AUTHOR), Zhao, Ling² (AUTHOR), Song, Yu¹ (AUTHOR), Qiao, Yanming¹ (AUTHOR), Wang, Zhen-Xin³ (AUTHOR), Qi, Jianzhao^1,3 (AUTHOR) qjz@nwafu.edu.cn

Źródło: BMC Genomics. 6/18/2024, Vol. 25 Issue 1, p1-15. 15p.

Hasła: *COMPARATIVE genomics, *GENETIC variation, *GENE families, *BIOSYNTHESIS, *FRUITING bodies (Fungi), *GENE clusters

Comparative mitochondrial genomics in Nematoda reveal astonishing variation in compositional biases and substitution rates indicative of multi-level selection.

Autorzy: Gendron, Eli M. S.¹ (AUTHOR) egendron@ufl.edu, Qing, Xue² (AUTHOR) qingxue@njau.edu.cn, Sevigny, Joseph L.^3,4 (AUTHOR), Li, Hongmei² (AUTHOR), Liu, Zhiyin² (AUTHOR), Blaxter, Mark⁵ (AUTHOR), Powers, Thomas O.⁶ (AUTHOR), Thomas, W. Kelly^3,4 (AUTHOR), Porazinska, Dorota L.¹ (AUTHOR)

Źródło: BMC Genomics. 6/18/2024, Vol. 25 Issue 1, p1-29. 29p.

Hasła: *COMPARATIVE genomics, *NEMATODES, *GENOME size, *GENOMES, *PHYLOGENY, *ECOSYSTEMS

Comparative genomics reveals insights into the potential of Lysinibacillus irui as a plant growth promoter.

Autorzy: Hilário, Sandra^1,2 (AUTHOR) hilario.sandra@fc.up.pt, Gonçalves, Micael F. M.³ (AUTHOR), Matos, Inês¹ (AUTHOR), Rangel, Luis F.¹ (AUTHOR), Sousa, José A.^1,4 (AUTHOR), Santos, Maria J.^1,4 (AUTHOR), Ayra-Pardo, Camilo¹ (AUTHOR) cayrapardo@ciimar.up.pt

Źródło: Applied Microbiology & Biotechnology. 6/11/2024, Vol. 108 Issue 1, p1-22. 22p.

Hasła: *COMPARATIVE genomics, *WHOLE genome sequencing, *PLANT growth, *SUSTAINABLE agriculture, *DATE palm, *PLANT genes, *GENE clusters

Hasła geograficzne: PHOENIX (Ariz.)

Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis.

Autorzy: Coelho, Marco A.¹ (AUTHOR), David-Palma, Márcia¹ (AUTHOR), Shea, Terrance² (AUTHOR), Bowers, Katharine² (AUTHOR), McGinley-Smith, Sage² (AUTHOR), Mohammad, Arman W.² (AUTHOR), Gnirke, Andreas² (AUTHOR), Yurkov, Andrey M.³ (AUTHOR), Nowrousian, Minou⁴ (AUTHOR), Sun, Sheng¹ (AUTHOR) sheng.sun@duke.edu, Cuomo, Christina A.² (AUTHOR) sheng.sun@duke.edu, Heitman, Joseph¹ (AUTHOR) sheng.sun@duke.edu

Źródło: PLoS Biology. 6/6/2024, Vol. 22 Issue 6, p1-48. 48p.

Hasła: *COMPARATIVE genomics, *HORIZONTAL gene transfer, *KARYOTYPES, *CRYPTOCOCCUS, *CHROMOSOME structure, *GENOMICS, *PATHOGENIC fungi

Genome sequencing and comparative genomics reveal insights into pathogenicity and evolution of Fusarium zanthoxyli, the causal agent of stem canker in prickly ash.

Autorzy: Ruan, Zhao¹ (AUTHOR), Jiao, Jiahui¹ (AUTHOR), Zhao, Junchi¹ (AUTHOR), Liu, Jiaxue¹ (AUTHOR), Liang, Chaoqiong² (AUTHOR), Yang, Xia¹ (AUTHOR), Sun, Yan¹ (AUTHOR), Tang, Guanghui¹ (AUTHOR), Li, Peiqin¹ (AUTHOR) lipq@nwsuaf.edu.cn

Źródło: BMC Genomics. 5/21/2024, Vol. 25 Issue 1, p1-20. 20p.

Hasła: *ZANTHOXYLUM, *COMPARATIVE genomics, *NUCLEOTIDE sequencing, *FUSARIUM, *SECONDARY metabolism, *MOLECULAR interactions, *COLLETOTRICHUM

The promise and pitfalls of synteny in phylogenomics.

Autorzy: Steenwyk, Jacob L.^1,2 (AUTHOR) jlsteenwyk@berkeley.edu, King, Nicole^1,2 (AUTHOR)

Źródło: PLoS Biology. 5/20/2024, Vol. 22 Issue 5, p1-23. 23p.

Hasła: *COMPARATIVE genomics, *PHYLOGENY, *LOCUS (Genetics)